References and Citations


[Bulletin Board]


Posted by Marty Gingras on 2011-11-07 10:27:10 in reply to Science posted by Marty Gingras on 2011-11-02 08:33:07

Here are the references we cite in the report we'll submit to the Commission along with the proposed regulatory language. I pdfed most, posted them on an ftp site, and posted the link here:

ftp://ftp.delta.dfg.ca.gov/Adult_Sturgeon_and_Striped_Bass/Staff%20Report%20---%20Literature%20Cited/

Botsford, L. W. 2009. Evaluation of Expert Report by D.H. Bennett, “Effect of Sport Fishing Regulations on Striped Bass Population and Predation in the Delta”. California Department of Fish and Game.

Bowen, M.D., S. Hiebert, C. Hueth, and V. Maisonneuve. 2009. 2009 effectiveness of a non-physical fish barrier at the divergence of the Old and San Joaquin Rivers (CA). Draft Report. Tech. Memo. 86-68290-11. U.S. Bureau of Reclamation

Boyd, S. 2007. Striped Bass Predation on Juvenile Chinook Salmon in the Mokelumne River East Bay Municipal Utilities District Fisheries & Wildlife Division East bay Municipal Utility District, 1 Winemasters Way, Suite K, Lodi, CA 95240. September.

California Department of Fish and Game. Status of Central Valley Chinook Salmon Populations 2010 Annual Spawning Escapement Update. Report to State Water Resources Control Board Division of Water Rights. June 2011.

California Department of Fish and Game (CDFG). Carmel Lagoon Striped Bass Removal Project Report. 2010.

California Department of Fish and Game (CDFG). 2008. A Status Review of the Threatened Delta Smelt (Hypomesus transpacificus) in California. Report to the Fish and Game Commission.

California Department of Fish and Game (CDFG). Unpublished. Metadata for StomachContents_orig.mdb. Stockton, CA.

California Department of Fish and Game (CDFG). 2009. A Status Review of the Longfin Smelt (Spirinchus thaleichthys) in California. Report to the Fish and Game Commission.

California Department of Fish and Game (CDFG). 1999. Conservation plan for the California Department of Fish and Game striped bass management program.

Castillo, G., J. Morinaka, J. Lindberg, R. Fujimura, B. Baskerville-Bridges, J. Hobbs, G. Tigan, and L. Ellison. 2010. Mark Recapture Study on Delta Smelt. Final Report. Cooperative Agreement # 813327J009. U.S. Fish and Wildlife Service, Stockton, CA 95205.

Clark, K. W., M. D. Bowen, R. B. Mayfield, K. P. Zehfuss, J. D. Taplin, and C. H. Hanson. 2009. Quantification of pre-screen loss of juvenile steelhead in Clifton Court Forebay. Fishery Improvements Section Bay-Delta Office CA Department of Water Resources In collaboration with: National Marine Fisheries Service Central Valley Fish Facilities Review Team Interagency Ecological Program Management Team.

Cummins, K., C. Furey, A. Giorgi, S. Lindley, J. Nestler, and J. Shurts. 2008. Listen to the River: An Independent Review of the CVPIA Fisheries Program. Prepared under contract with Circlepoint for the U.S. Bureau of Reclamation and the U.S. Fish and Wildlife Service.

DuBois, J. 2009. Factors affecting harvest and fishing effort in the anadromous striped bass fishery of California. California Department of Fish and Game. Stockton, CA.

Gingras, M. 1997. Mark/recapture experiments in Clifton Court Forebay to estimate pre-screening loss to juvenile fish: 1976-1993. Interagency Ecological Program for the San Francisco Bay/Delta Estuary, a cooperative program of California Department of Water Resources and California Department of Fish and Game. Technical Report 55.

Johnson, J. H., A. A. Nigro, and R. Temple. 1992. Evaluating enhancement of striped bass in the context of potential predation on anadromous salmonids in Coos Bay, Oregon. Trans. Amer. Fish. Soc. 12: 103-108.

Kohlhorst, D. W. 1999. Status of striped bass in the Sacramento-San Joaquin Estuary. California Fish and Game 85 (1):31-36.

Knutsen, C. J. and D. L. Ward. 1999. Biological Characteristics of Northern Pikeminnow in the Lower Columbia and Snake Rivers before and after Sustained Exploitation. Transactions of the American Fisheries Society. 128:1008-1019.

Lindley, S. T. and M. S. Mohr. 2003. Modeling the effect of striped bass (Morone saxatilis) on the population viability of Sacramento River Winter-run Chinook salmon (Oncorhynchus tshawytscha). Fish. Bull. 101:321-331.

Lindley, S. T., C. B. Grimes, M. S. Mohr, W. Peterson, J. Stein, J. T. Anderson,
L.W. Botsford, , D. L. Bottom, C. A. Busack, T. K. Collier, J. Ferguson, J. C. Garza,
A. M. Grover, D. G. Hankin, R. G. Kope, P. W. Lawson, A. Low, R. B. MacFarlane,
K. Moore, M. Palmer-Zwahlen, F. B. Schwing, J. Smith, C. Tracy, R. Webb,
B. K. Wells, T. H. Williams. 2009. What caused the Sacramento River fall Chinook stock collapse? Pre-publication report to the Pacific Fishery Management Council.

Loboschefsky, E., G. Benigno, T. Sommer, T. Ginn, A. Massoudieh, K. Rose and F. Loge. 2009. Bioenergetic Modeling of Striped Bass Predation in California from 1969-2004. Prepared for: Department of Civil and Environmental Engineering, University of California, Davis.

Loboschefsky, E., G. Benigno, T. Sommer, T. Ginn, A. Massoudieh, K. Rose and F. Loge. 2011. Individual-level and Population-level Historical Prey Demand of San Francisco Estuary Striped Bass using a Bioenergetics Model. Submitted.

MacFarlane, R. B., A. P. Klimley, S. L. Lindley, A. A. Ammann, P. T. Sandstrom, C. J. Michel, and E. D. Chapman. 2008. Migration and survival of juvenile salmonids in California’s Central Valley and San Francisco estuary, 2007 and 2008 data. Presentation given to Southwest Region Protected Resources Division, National Marine Fisheries Service, Lake Tahoe, California. August 20, 2008.

Michel, C. J. 2010. River and estuarine survival and migration of yearling Sacramento River Chinook Salmon (Onchorhynchus tshawytscha) smolts and influence of environment. Masters Thesis submitted to University of California at Santa Cruz, CA. 130 pages.

National Marine Fisheries Service (NMFS). 2009a. Public draft Recovery Plan for the evolutionarily significant units (ESU) of Sacramento River Winter-run Chinook salmon and Spring-run Chinook salmon and the distinct population segment of Central Valley steelhead. October 2009.

National Marine Fisheries Service (NMFS). 2009b. Biological Opinion on the Long-Term Operations of the Central Valley Project and State Water Project.

National Marine Fisheries Service (NMFS). 2011a. 5-Year Review: Summary and Evaluation of Sacramento River Winter-run Chinook Salmon ESU. National Marine Fisheries Service Southwest Region. Long Beach, CA.

National Marine Fisheries Service (NMFS). 2011b. 5-Year Review: Summary and Evaluation of Central Valley Spring-run Chinook Salmon ESU. National Marine Fisheries Service Southwest Region. Long Beach, CA.

National Marine Fisheries Service (NMFS). 2011c. 5-Year Review: Summary and Evaluation of Central Valley Steelhead DPS. National Marine Fisheries Service Southwest Region. Long Beach, CA.

Newman, K. B. and P. L. Brandes. 2010. Hierarchical Modeling of Juvenilc Chinook Salmon Survival as a Function of Sacramento-San Joaquin Delta Water Exports. North American Journal of Fisheries Management. 30:157-169.

Nobriga, M. L., and F. Feyrer. 2007. Shallow-water piscivore-prey dynamics in the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science. Available at: http://repositories.cdlib.org. (June 2008).

Perry, R. W. and Skalski, J. R. 2008. Migration and survival of juvenile Chinook salmon through the Sacramento-San Joaquin River Delta during the winter of 2006-2007. University of Washington.

Perry, R. W. and Skalski, J. R. 2009. Survival and migration of juvenile Chinook salmon in the Sacramento-San Joaquin River Delta during the winter of 2007-2008. University of Washington.

Porter, R. 2010. Report on the predation index, predator control fisheries, and program evaluation for the Columbia River Basin experimental northern pikeminnow management program. 2010 Annual Report. Pacific States Marine Fisheries Commission 1990 Annual Report to the Bonneville Power Administration, Portland, Oregon.

Reiman, B. E. and R. C. Beamesderfer. 1991. Estimated Loss of Juvenile Salmonids to Predation by Northern Squawfish, Walleyes, and Smallmouth Bass in John Day Reservoir, Columbia River. Transactions of the American Fisheries Society. 120:448-458.

Shapovalov, L. 1936. Food of the Striped Bass. California Fish and Game, Vol. 22, No. 4, pp. 261-270.

Shapovalov, L. and A. C. Taft. 1954. The life histories of the steelhead rainbow trout (Salmo gairdneri gairdner) and silver salmon (Oncorhynchus kisutch) with special reference to Wadell Creek, California, and recommendations regarding their management. Calif. Fish. Bull. 98. 375 p.

Sommer, T. R., Francine M., K. Hieb, R. Baxter, E. J. Loboschefsky and F. J. Loge. 2011. Long-term shifts in the lateral distribution of age-0 striped bass Morone saxatilis in the San Francisco estuary. In press. Transactions of the American Fisheries Society.

Stevens, D. L. 1963. Food habits of striped bass, Roccus saxatilis (Walbaum) in the Sacramento-Rio Vista area of the Sacramento River. University of California.

Stevens, D. L. 1966. Food habits of striped bass (Roccus saxatilis) in the Sacramento-San Joaquin Delta. Pages 68-96 in J.L. Turner and D.W. Kelley, eds. Ecological studies of the Sacramento-San Joaquin Estuary, part II: fishes of the Delta. California Department of Fish and Game. Bull.136.

Stevens, D. E., D.W. Kohlhorst, L.W. Miller, and D.W. Kelley. 1985. The decline of striped bass in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society 114:12-30.

Thomas, J. L. 1967. The diet of juvenile and adult striped bass, Roccus saxatilis, in the Sacramento-San Joaquin river system. California Department of Fish and Game 53(1):49-62.

Tucker, M. E., C. M. Williams and R. R. Johnson. 1998. Abundance, food habits and life history aspects of Sacramento squawfish and striped bass at the Red Bluff Diversion Complex, including the Research Pumping Plant, Sacramento River, California, 1994-1996. Red Bluff Research Pumping Plant Report Series, Volume 4. U.S. Fish and Wildlife Service, Red Bluff, California.

U.S. Fish and Wildlife Service (USFWS). 2005. Recovery Plan for the Tidewater Goby (Eucyclogobius newberryi). U.S. Fish and Wildlife Service, Portland, Oregon.

U.S. Fish and Wildlife Service (USFWS). 2010. Endangered and Threatened Wildlife and Plants; 12-Month Finding on a Petition to Reclassify the Delta Smelt From Threatened to Endangered Throughout Its Range. Federal Register: April 7, 2010 (Volume 75, Number 66)]

Vogel, D. 2010. Evaluation of acoustic-tagged juvenile Chinook salmon movements in the Sacramento-San Joaquin Delta during the 2009 Vernalis Adaptive Management Program - February 2010 Draft. Natural Resource Scientists, Inc. Red Bluff, CA.

Here are some other pertinent references that we include as an appendix to the report we'll submit to the Commission along with the proposed regulatory language, but didn't cite or pdf:

Blackwell, B.F., and F. Juanes. 1998. Predation on Atlantic salmon smolts by striped bass after dam passage. North American Journal of Fisheries Management, 18: 936-939.

Boyd, S.R. 1994. Evaluation of potential striped bass predation on fall Chinook salmon below Woodbridge Diversion Dam. Technical report for EBMUD. Orinda, California 8 pp.

Brown, L.R., Moyle, P.B. 1981. The impact of squawfish on salmonid populations: a review. North American Journal of Fisheries Management 1:104-111.

Brown, L.R., Moyle, P. B. 1991. Changes in habitat and microhabitat partitioning within an assemblage of stream fishes in response to predation by Sacramento squawfish (Ptychocheilus grandis). Canadian Journal of Fisheries and Aquatic Sciences 48:849-856.

California Department of Fish and Game (CDFG). 2005. The Status of Rare, Threatened, and Endangered Plants and Animals of California 2000–2004. Sacramento, CA.

DuBois, J. 2009. Metadata for consumption of delta smelt by striped bass as calculated in Predation.xls, submitted as an export report in Coalition for a Sustainable Delta et al. v. Koch; California case # CV 08-397-OWW.

Fishery Foundation of California. 2009. San Francisco Bay estuary acclimation of Central Valley hatchery raised Chinook salmon project. Final Report. Prepared for California Department of Fish and Game. July 2009.

Fresh, K.L., S.L. Schroder and M.I. Carr. 2003. Predation by northern pikeminnow on hatchery and wild coho salmon smolts in the Chehalis River, Washington. North American J. Fish. Manage. 23:1257-1264.

Fritts, A. L., and T. N. Pearsons. 2004. Smallmouth bass predation on hatchery and wild salmonids in the Yakima River, Washington. Trans. Am. Fish. Soc. 133: 880-895.

Grout, Douglas E. 2006. Interactions between striped bass (Morone saxatilis) rebuilding programmes and the conservation of Atlantic salmon (Salmo salar) and other anadromous fish species in the USA. ICES Journal of Marine Science, 63: 1346-1352

Hanson, C. H. 2009. Striped bass predation on listed fish within the Bay-Delta estuary and tributary rivers, submitted as an expert report in Coalition for a Sustainable Delta et al. v. McCamman; (Case No. CV 08-397-OWW).

Hartman, K. J. 2003. Population-level consumption by Atlantic coastal striped bass and the influence of population recovery on prey communities. Fisheries Management and Ecology 10:281-288.

Hartman, K. J. 2000. Variability in daily ration estimates of age-0 striped bass in the Chesapeake Bay. Transactions of the American Fisheries Society 129:1181-1186.

Hartman, K. J. 2000. The influence of size on striped bass foraging. Marine Ecology Progress Series 194:263-268.

Hartman, K. J, Brandt, SB. 1993. Systematic sources of bias in a bioenergetics model: examples for age-0 striped bass. Transactions of the American Fisheries Society 122:912-926.

Hartman, K. J, Brandt, SB. 1995. Comparative energetics and the development of bioenergetics models for sympatric estuarine piscivores. Canadian Journal of Fisheries and Aquatic Sciences 52:1647-1666.

Hvidsten, N. A., and P. I. Møkkelgjerd. 1987. Predation on salmon smolts, Salmo salar L., in the estuary of the River Surna, Norway. Journal of Fish Biology 30: 273-280.

Jokikokko, E., I. Kallio-Nyberg, I. Saloniemi and E. Jutila. 2006. The survival of semi-wild, wild and hatchery-reared Atlantic salmon smolts of the Simojoki River in the Baltic Sea. J. Fish Biol. 68: 430-442.

Leet, W.S., R.E. Green, and D. Ralph. 1986. Pen rearing Pacific salmon, Oncorhynchus spp., in San Francisco Bay. Marine Fisheries Review 48: 24-31.

Liston, C., C. Karp, L. Hess and S. Hiebert. 1994. Predator Removal Activities and Intake Channel Studies, 1991-1992. Tracy Fish Collection Facility Studies, Vol. 1, U.S. Bureau of Reclamation, Mid Pacific Region and Denver Service Center. 54 pp.

MacNally, R., J. R. Thompson, W. J. Kimmerer, F. Feyrer, K. B. Newman, A. Sih, W. A. Bennett, L. Brown, E. Fleishman, S. D. Culberson, and Gonzalo Castillo. 2010. An analysis of pelagic species decline in the upper San Francisco Estuary using multivariate autoregressive modeling (MAR). Ecological Applications, 20: 167-180.

Maunder, M. N. and R. B. Deriso. 2011. A state–space multistage life cycle model to evaluate population impacts in the presence of density dependence: illustrated with application to delta smelt (Hyposmesus transpacificus). Canadian Journal of Fisheries and Aquatic Sciences, 2011, 687) 1285-1306.

Merz, J.E. 2003. Striped bass predation on juvenile salmonids at the Woodbridge Dam Afterbay, Mokelumne River, California. Unpublished draft document. East Bay Municipal Utility District. 4 pages plus 6 figures.

Morgan, A., and A. Gerlach. 1950. Striped bass studies on Coos Bay. Oregon in 1949 and 1950. Joint report of the Oregon Fish Commission and the Oregon Game Commission to the 46th Oregon Legislature, Salem. Cited in Johnson et al. 1992.

Moyle, P.B. 2002. Inland fishes of California. University of California Press. Berkeley.

Nelson, G. A., B. C. Chase, and J. D. Stockwell. 2006. Population consumption of fish and invertebrate prey by striped bass (Morone saxatilis) from coastal waters of Northern Massachusetts, USA. J. Northw. Atl. Fish. Sci., 36: 111–126.

Newman, K. B. 2008. Sample Design-based Methodology for Estimating Delta Smelt Abundance. San Francisco Estuary and Watershed Science 6(3).

Nobriga, ML, Feyrer, F, Baxter, RD. 2006. Aspects of Sacramento pikeminnow biology in nearshore habitats of the Sacramento-San Joaquin Delta, California. Western North American Naturalist 66:106-114.

Nobriga, M.L. 2009. A synopsis of the state of science regarding the feeding ecology of San Francisco Estuary striped bass and its effects on listed fishes, submitted as an expert report in Coalition for a Sustainable Delta et al. v. McCamman; (Case No. CV 08-397-OWW).

Nobriga, M.L., and F. Feyrer. 2008. Diet composition in San Francisco Estuary striped bass: Does trophic adaptability have its limits? Environmental Biology Fish 83: 495-503.

Orsi, J. 1967. Predation study report, 1966-1967. California Department of Fish and Game.

Overton, A. S., C. S. Manooch III, J. W. Smith, and K. Brennan. 2008. Interactions between adult migratory striped bass (Morone saxatilis) and their prey during winter off the Virginia and North Carolina Atlantic coast from 1994 through 2007. Fish. Bull. 106:174–182

Rieman, B. E., R. C. Beamesderfer, S. Vigg, and T. P. Poe. 1991. Estimated loss of juvenile salmonids to predation by northern squawfish, walleyes, and smallmouth bass in John Day Reservoir, Columbia River. Trans. Am. Fish. Soc. 120:448-458.

Rieman, B.E. and R.C. Beamesderfer. 1990. Dynamics of a northern squawfish population and the potential to reduce predation on juvenile salmonids in a Columbia River Reservoir. North American Journal of Fisheries Management 10: 228-241.

Tucker, M.E., C.D. Martin and P.D. Gaines. 2003. Spatial and temporal distribution of Sacramento pikeminnow and striped bass at the Red Bluff Diversion Complex, including the Research Pumping Plant, Sacramento River, California: January 1997 to August, 1998. Red Bluff Research Pumping Plant Report Series, Volume 10. U.S. Fish and Wildlife Service, Red Bluff, California.

Unwin, M.J. 1997. Fry-to-adult survival of natural and hatchery-produced chinook salmon (Oncorhynchus tshawytscha) from a common origin. Can. J. Fish. Aquat. Sci. 54: 1246-1254.

Villa, N. 1985. CDF&G memo documenting predation of Chinook salmon by striped bass at Red Bluff Diversion Dam, California 2 pp.

Vogel, D.A., and K.R. Marine. 1994. Evaluation of the Downstream Migration of Juvenile Chinook Salmon and Steelhead in the Lower Mokelumne River and the Sacramento-San Joaquin Delta (January through July 1993). Technical Report for EBMUD. Orinda, California. 60 pp.

Vogel, D.A., and K.R. Marine. 2000. Downstream migration monitoring at Woodbridge Dam during December 1998 through July 1999. Technical report for EBMUD, Orinda, California. 38 pp.

Ward, D. L., J. H. Petersen, J. J. Loch. 1995. Index of predation on juvenile salmonids by northern squawfish in the lower and middle Columbia River and in the lower Snake River. Trans. Am. Fish. Soc. 124:321-334.


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